PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488168.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 1137aa    MW: 127267 Da    PI: 8.5456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.7e-084479340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+  ++++a +++G++ Wk++a+ +   Rt +++
   XP_016488168.1 44 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 79
                     7*****************99.******998.7887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-93988IPR009057Homeodomain-like
SMARTSM007171.7E-44189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-44479IPR009057Homeodomain-like
PfamPF002491.6E-64480IPR001005SANT/Myb domain
CDDcd001677.23E-64479No hitNo description
SMARTSM011352.5E-58631732IPR033471DIRP domain
PfamPF065841.8E-33631731IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY  60
GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ  120
ESNEDAGTSR KPQKRARGKV QSNISKAYEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK  180
RTPRFPVSFS CGNPKGEKYF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP  240
NRRTDSAMSS PVETAERKHV KIGMGNAKLL SNEVDEEEGS MEADTGELLR YKNDSVETGT  300
FGRTAQKGRR PYGKKLEIDD SGANHFDDIK EACSGTEEGQ ILGVVRGKLE MEATYEKNSR  360
TSLQGPRKRS KKVLFSRDES SAFDALQTLA DLSLMMPTAE NEDESMIQFN DELDDHVDES  420
GSLEAVPANR HRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR  480
AHKAMSSKAR KTEGHVNNNV AGSEEAEAKE ASKKSTYKGK RSYQSASPKL IKDQEPSSCA  540
DPRTERSDSA QSTAEIPVAN QVNLPTKVRS RRKMDLKKPQ RQKDLKIPDK SLDDTSASFT  600
ALHDRAFSLK ENISNCLSNH QVRRWCTYEW FYSAIDYPWF AKRDFVEYLN HVGLGHVPRL  660
TRVEWGVIRS SLGKPRRFSE QFLNEEKEKL NQYRESVRTH YTELREGTRE GLPTDLARPL  720
SVGQRVIAIH PKTREIHDGS VLTVDRSRCR VQFDRPELGV EFVMDIDCMP LNPFENMPTL  780
LTRRADAVDK FFESFNELKV NARVNEYMKF PACDNMENGN VFSHFSPPSH PISDLLKQTK  840
VASAEVDMQS RFGVMETAIY QSTAYSKSSG VAQIQAKEAD VQALAELARA LDKKEAVVSE  900
LRRMNDDVLE NQTSNDCSLK DSETFKKQYA AMLIQLNEVN EEVSSALYRL RQRNTYQGSI  960
PLAFPRPVPN FADPSTLSTF DRCTSQSQES GFLVNEIIES SKIKARTMVD AAVQAMLSLT  1020
DRDNTTEKIE EAIGYVNDRI PLDDSCMPTQ PTDPKSKNMS DKNEAEIPSE LITKCVATLL  1080
MIQKCSERQF PPADVAKVLD SAVASLQPCC SQNFPIYAEI QQCMGIIRNQ ILALVPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935KNLRKRK
23136LRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-115HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488168.10.0PREDICTED: protein ALWAYS EARLY 3-like
RefseqXP_016488169.10.0PREDICTED: protein ALWAYS EARLY 3-like
RefseqXP_016488170.10.0PREDICTED: protein ALWAYS EARLY 3-like
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLK4AX040.0K4AX04_SOLLC; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding